PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11715
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 288aa    MW: 32832.4 Da    PI: 8.7894
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11715genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.22.1e-40701972132
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssgkaaksaaksk 98 
                 + +kdrh+ki+T++g+RdRR+Rls+++a++fFdLqd L fdk+s+t++WLl+++k+aike +    +  s sec   +++ssa  ++  k+++ aa + 
  PEQU_11715  70 PLRKDRHKKIYTAKGPRDRRMRLSLDVARKFFDLQDLLAFDKASNTVQWLLNKSKAAIKEHMAEskGKVSTSEC---EERSSAICEN--KRKSPAAAET 163
                 579***********************************************************994433333566...3333333222..2333333677 PP

         TCP  99 ksqksaasalnlakesrakarararertrekmri 132
                 k++k+++++l +a+e r karararert ek+++
  PEQU_11715 164 KASKRTTAMLRVARECRDKARARARERTLEKKKK 197
                 777777779*******************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3372197IPR005333Transcription factor, TCP
PROSITE profilePS5136933.31272130IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.105177194IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLRTMFPQSN DIYSSFFPFS PPTLNYGSLH DIFSFSTSAA AENNPPEPSQ LLPAEAIAAP  60
EKTASSRTRP LRKDRHKKIY TAKGPRDRRM RLSLDVARKF FDLQDLLAFD KASNTVQWLL  120
NKSKAAIKEH MAESKGKVST SECEERSSAI CENKRKSPAA AETKASKRTT AMLRVARECR  180
DKARARARER TLEKKKKMMM IQCYEQLEGR EGNQEPHELI MKSSLQNLAE MKEQCFITSH  240
INHEELSGDG SIAICGYNDN VETFFQDQRD MIFTENIDEI VLLGELLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ93WI22e-28TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLG0Y2K68e-38G0Y2K6_9MAGN; CYC-like protein 1 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.27e-26TCP family protein